Job 03 · Substantiate

A package that answers what the committee, the reviewer and the funder will ask.

The report separates what was measured, what was inferred and what was interpreted. Each layer states what supports it.

The result

A report that connects each conclusion to its evidence and its limits.

A report that separates observation, inference and interpretation, with the intended use stated in writing.

Available The format is published and can be downloaded from the public microbiome case.

Observation, inference and interpretation are never mixed in the same sentence. Each declares its own uncertainty.

The document states that it is research. That protects your team and defines what cannot be claimed with it.

Results that fail the criteria appear in the same report, at the same level of detail.

Snakemake · microbiome-counts-analysis 1.0.0 · Synthetic labels · OLS on CLR · BH · seed 1729

verifiable synthetic samples

What held up

A diversity signal holds under the documented depth check.

What did not hold up

Of the two significant contrasts, neither survived the sensitivity test. We publish that too.

We publish both. A method that only shows its successes cannot be evaluated.

The limitThe package supports a research conclusion. It does not replace a professional's assessment or a regulatory dossier.

We first agree on the question, the assay, the data rights and the deliverable. Then we decide whether working together makes sense.